What we analyse

The full scope, including where it stops.

Everything below is analysis of data you already have. We do not run wet lab work, and we do not resell sequencing.

Single-cell / single-nucleus RNA-seq

From count matrix to annotated populations

Accepts Cell Ranger output, an AnnData .h5ad, a Seurat object, or a plain matrix.

Empty-droplet and doublet handling, ambient RNA correction
Per-dataset QC thresholds with the reasoning shown
Clustering across a resolution range, not a single guess
Automated plus manual cell-type annotation, verified against markers
Differential expression aggregated to sample level for group comparisons
Gene-set and pathway scoring

Spatial transcriptomics

Sequencing-based and imaging-based

Visium and Visium HD, Stereo-seq, Xenium, CosMx, MERFISH.

Spot and cell QC, tissue detection, image registration
Spatial domain identification
Spatially variable genes
Deconvolution against a matched single-cell reference
Neighbourhood and co-localisation statistics
Overlays on the H&E or immunofluorescence image

Bulk RNA-seq

Differential expression that survives review

Intake from counts, or from FASTQ via a standard quantification pipeline
Design and contrasts written down before testing
Covariate and batch handling
GO, KEGG and GSEA enrichment
Volcano, heatmap, PCA and per-gene panels as vector files

Cross-cutting

Modules that sit on top of any of the above

Multi-sample integration with an over-correction check
Differential abundance between conditions
Trajectory and pseudotime
Cell–cell communication
CITE-seq and multiome (RNA + ATAC) joint analysis
Re-analysis of a public dataset alongside yours

Out of scope

What we will tell you we cannot do.

Wet lab work

No sample preparation, library construction or sequencing. If you need those, keep your provider — we work with whatever they return.

Clinical or diagnostic reporting

Our output is for research. We do not issue diagnostic interpretations and nothing we deliver is a medical device.

A conclusion you have already chosen

If the data does not support the comparison, that is what the report will say. It is cheaper to hear it from us than from a reviewer.

Not sure it fits? Send the data description and the question. If it is outside what we do well, we will say so in the reply rather than quote for it.

Tell us what you have.

Data type, rough scale, and the comparison you want to make. That is enough for a scope and a price.

Request a fixed quote See what you get back